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All interfaces > All interologs > Interface groups > group141 > 1SJ3_P_R vs 1URN_A_P

Interface analysis


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Licorice
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Common contacts -

1SJ3_P
1SJ3_R
1URN_A
1URN_P
Conserved?
P:19 [GLU] R:148 [A] A:19 [GLU] P:6 [A] ✔
P:19 [GLU] R:149 [U] A:19 [GLU] P:7 [U] ✔
P:19 [GLU] R:150 [U] A:19 [GLU] P:8 [U] ✔
P:19 [GLU] R:151 [G] A:19 [GLU] P:9 [G] ✔
P:13 [TYR] R:151 [G] A:13 [TYR] P:9 [G] ✔
P:13 [TYR] R:152 [C] A:13 [TYR] P:10 [C] ✔
P:91 [SER] R:153 [A] A:91 [SER] P:11 [A] ✔
P:91 [SER] R:154 [C] A:91 [SER] P:12 [C] ✔
P:15 [ASN] R:150 [U] A:15 [ASN] P:8 [U] ✔
P:15 [ASN] R:151 [G] A:15 [ASN] P:9 [G] ✔
P:90 [ASP] R:153 [A] A:90 [ASP] P:11 [A] ✔
P:90 [ASP] R:154 [C] A:90 [ASP] P:12 [C] ✔
P:87 [ALA] R:152 [C] A:87 [ALA] P:10 [C] ✔
P:87 [ALA] R:153 [A] A:87 [ALA] P:11 [A] ✔
P:17 [LEU] R:151 [G] A:17 [LEU] P:9 [G] ✔
P:11 [THR] R:153 [A] A:11 [THR] P:11 [A] ✔
P:88 [LYS] R:152 [C] A:88 [LYS] P:10 [C] ✔
P:49 [LEU] R:148 [A] A:49 [LEU] P:6 [A] ✔
P:49 [LEU] R:149 [U] A:49 [LEU] P:7 [U] ✔
P:49 [LEU] R:151 [G] A:49 [LEU] P:9 [G] ✔
P:49 [LEU] R:157 [C] A:49 [LEU] P:15 [C] ✔
P:49 [LEU] R:158 [G] A:49 [LEU] P:16 [G] ✔
P:22 [LYS] R:143 [A] A:22 [LYS] P:1 [A] ✔
P:22 [LYS] R:144 [C] A:22 [LYS] P:2 [A] ✔
P:53 [GLY] R:151 [G] A:53 [GLY] P:9 [G] ✔
P:6 [THR] R:152 [C] A:5 [GLU] P:10 [C] ✔
P:83 [ARG] R:150 [U] A:83 [ARG] P:8 [U] ✔
P:54 [GLN] R:151 [G] A:54 [GLN] P:9 [G] ✔
P:54 [GLN] R:152 [C] A:54 [GLN] P:10 [C] ✔
P:48 [SER] R:157 [C] A:48 [SER] P:15 [C] ✔
P:48 [SER] R:158 [G] A:48 [SER] P:16 [G] ✔
P:51 [MET] R:151 [G] A:51 [MET] P:9 [G] ✔
P:51 [MET] R:152 [C] A:51 [MET] P:10 [C] ✔
P:51 [MET] R:153 [A] A:51 [MET] P:11 [A] ✔
P:86 [TYR] R:152 [C] A:86 [TYR] P:10 [C] ✔
P:85 [GLN] R:152 [C] A:85 [GLN] P:10 [C] ✔
P:80 [LYS] R:150 [U] A:80 [LYS] P:8 [U] ✔
P:16 [ASN] R:150 [U] A:16 [ASN] P:8 [U] ✔
P:16 [ASN] R:151 [G] A:16 [ASN] P:9 [G] ✔
P:44 [LEU] R:153 [A] A:44 [LEU] P:11 [A] ✔
P:44 [LEU] R:154 [C] A:44 [LEU] P:12 [C] ✔
P:56 [PHE] R:152 [C] A:56 [PHE] P:10 [C] ✔
P:56 [PHE] R:153 [A] A:56 [PHE] P:11 [A] ✔
P:92 [ASP] R:154 [C] A:92 [ASP] P:12 [C] ✔
P:52 [ARG] R:148 [A] A:52 [ARG] P:6 [A] ✔
P:52 [ARG] R:149 [U] A:52 [ARG] P:7 [U] ✔
P:52 [ARG] R:151 [G] A:52 [ARG] P:9 [G] ✔
P:52 [ARG] R:158 [G] A:52 [ARG] P:16 [G] ✔
P:89 [THR] R:152 [C] A:89 [THR] P:10 [C] ✔
P:89 [THR] R:153 [A] A:89 [THR] P:11 [A] ✔
P:89 [THR] R:154 [C] A:89 [THR] P:12 [C] ✔
P:93 [ILE] R:154 [C] A:93 [ILE] P:12 [C] ✔
P:50 [LYS] R:151 [G] A:50 [LYS] P:9 [G] ✔
P:50 [LYS] R:152 [C] A:50 [LYS] P:10 [C] ✔
P:50 [LYS] R:153 [A] A:50 [LYS] P:11 [A] ✔
P:47 [ARG] R:143 [A] A:47 [ARG] P:1 [A] ❌ 1URN_A_P
P:47 [ARG] R:157 [C] A:47 [ARG] P:15 [C] ❌ 1URN_A_P
P:47 [ARG] R:158 [G] A:47 [ARG] P:16 [G] ❌ 1SJ3_P_R
P:50 [LYS] R:158 [G] A:50 [LYS] P:16 [G] ❌ 1SJ3_P_R
P:92 [ASP] R:155 [U] A:92 [ASP] P:13 [U] ❌ 1SJ3_R:155 no longer at interface
P:58 [ILE] R:153 [A] A:58 [ILE] P:11 [A] ❌ 1URN_A:58 no longer at interface
P:46 [SER] R:157 [C] A:46 [SER] P:15 [C] ❌ 1URN_A:46 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.94 0.52 0.91 0.97 0.55 1.0 1.0 0.98 0.97 0.86 0.43


Other pairs involving 1SJ3_P_R or 1URN_A_P

Total number of entries: 30

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 1URN_A_P 0.93 0.95 0.28 0.83 RNA-binding domain, RBD compare
1DRZ_A_B 1SJ3_P_R 0.97 0.95 0.31 0.97 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1URN_A_P 5HO4_A_B 0.68 0.59 2.13 0.0 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1URN_A_P 7DCO_4_G 0.23 0.6 1.36 0.17 RNA-binding domain, RBD compare
1URN_A_P 5TF6_A_B 0.54 0.62 3.87 0.0 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
1URN_A_P 6DCL_A_D 0.33 0.61 1.95 0.17 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_X_G 0.42 0.64 2.53 0.12 RNA-binding domain, RBD compare
1URN_A_P 4PR6_A_B 0.93 0.94 0.27 0.83 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
1A9N_B_Q 1SJ3_P_R 0.83 0.85 0.49 0.55 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1M5O_C_B 1SJ3_P_R 0.96 0.69 0.42 0.91 RNA-binding domain, RBD compare
1SJ3_P_R 7DCO_R_G 0.76 0.5 2.55 0.17 compare
1SJ3_P_R 6F4G_B_C 0.83 0.83 0.4 0.55 RNA-binding domain, RBD compare
1SJ3_P_R 6F4H_A_B 0.97 0.96 0.38 0.71 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 4PR6_A_B 0.97 0.95 0.29 0.97 RNA-binding domain, RBD compare
1SJ3_P_R 3MXH_P_R 0.95 0.64 1.0 0.78 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 2NZ4_A_P 0.94 0.65 0.37 0.91 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare