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All interfaces > All interologs > Interface groups > group141 > 1SJ3_P_R vs 4PKD_B_V

Interface analysis


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Common contacts -

1SJ3_P
1SJ3_R
4PKD_B
4PKD_V
Conserved?
P:19 [GLU] R:148 [A] B:19 [GLU] V:65 [A] ✔
P:19 [GLU] R:149 [U] B:19 [GLU] V:66 [U] ✔
P:19 [GLU] R:150 [U] B:19 [GLU] V:67 [U] ✔
P:19 [GLU] R:151 [G] B:19 [GLU] V:68 [G] ✔
P:13 [TYR] R:151 [G] B:13 [TYR] V:68 [G] ✔
P:13 [TYR] R:152 [C] B:13 [TYR] V:69 [C] ✔
P:91 [SER] R:153 [A] B:91 [SER] V:70 [A] ✔
P:91 [SER] R:154 [C] B:91 [SER] V:71 [C] ✔
P:15 [ASN] R:150 [U] B:15 [ASN] V:67 [U] ✔
P:15 [ASN] R:151 [G] B:15 [ASN] V:68 [G] ✔
P:90 [ASP] R:153 [A] B:90 [ASP] V:70 [A] ✔
P:90 [ASP] R:154 [C] B:90 [ASP] V:71 [C] ✔
P:87 [ALA] R:152 [C] B:87 [ALA] V:69 [C] ✔
P:87 [ALA] R:153 [A] B:87 [ALA] V:70 [A] ✔
P:17 [LEU] R:151 [G] B:17 [LEU] V:68 [G] ✔
P:11 [THR] R:153 [A] B:11 [THR] V:70 [A] ✔
P:88 [LYS] R:152 [C] B:88 [LYS] V:69 [C] ✔
P:49 [LEU] R:148 [A] B:49 [LEU] V:65 [A] ✔
P:49 [LEU] R:149 [U] B:49 [LEU] V:66 [U] ✔
P:49 [LEU] R:151 [G] B:49 [LEU] V:68 [G] ✔
P:49 [LEU] R:158 [G] B:49 [LEU] V:75 [G] ✔
P:22 [LYS] R:143 [A] B:22 [LYS] V:59 [GTP] ✔
P:22 [LYS] R:144 [C] B:22 [LYS] V:60 [G] ✔
P:53 [GLY] R:151 [G] B:53 [GLY] V:68 [G] ✔
P:54 [GLN] R:151 [G] B:54 [GLN] V:68 [G] ✔
P:54 [GLN] R:152 [C] B:54 [GLN] V:69 [C] ✔
P:48 [SER] R:157 [C] B:48 [SER] V:74 [C] ✔
P:48 [SER] R:158 [G] B:48 [SER] V:75 [G] ✔
P:51 [MET] R:151 [G] B:51 [MET] V:68 [G] ✔
P:51 [MET] R:152 [C] B:51 [MET] V:69 [C] ✔
P:51 [MET] R:153 [A] B:51 [MET] V:70 [A] ✔
P:86 [TYR] R:152 [C] B:86 [TYR] V:69 [C] ✔
P:85 [GLN] R:152 [C] B:85 [GLN] V:69 [C] ✔
P:80 [LYS] R:150 [U] B:80 [LYS] V:67 [U] ✔
P:46 [SER] R:157 [C] B:46 [SER] V:74 [C] ✔
P:16 [ASN] R:150 [U] B:16 [ASN] V:67 [U] ✔
P:16 [ASN] R:151 [G] B:16 [ASN] V:68 [G] ✔
P:44 [LEU] R:153 [A] B:44 [LEU] V:70 [A] ✔
P:44 [LEU] R:154 [C] B:44 [LEU] V:71 [C] ✔
P:56 [PHE] R:152 [C] B:56 [PHE] V:69 [C] ✔
P:56 [PHE] R:153 [A] B:56 [PHE] V:70 [A] ✔
P:92 [ASP] R:154 [C] B:92 [ASP] V:71 [C] ✔
P:52 [ARG] R:148 [A] B:52 [ARG] V:65 [A] ✔
P:52 [ARG] R:149 [U] B:52 [ARG] V:66 [U] ✔
P:52 [ARG] R:151 [G] B:52 [ARG] V:68 [G] ✔
P:52 [ARG] R:158 [G] B:52 [ARG] V:75 [G] ✔
P:89 [THR] R:152 [C] B:89 [THR] V:69 [C] ✔
P:89 [THR] R:153 [A] B:89 [THR] V:70 [A] ✔
P:89 [THR] R:154 [C] B:89 [THR] V:71 [C] ✔
P:47 [ARG] R:143 [A] B:47 [ARG] V:59 [GTP] ✔
P:47 [ARG] R:157 [C] B:47 [ARG] V:74 [C] ✔
P:50 [LYS] R:151 [G] B:50 [LYS] V:68 [G] ✔
P:50 [LYS] R:153 [A] B:50 [LYS] V:70 [A] ✔
P:49 [LEU] R:157 [C] B:49 [LEU] V:74 [C] ❌ 4PKD_B_V
P:50 [LYS] R:152 [C] B:50 [LYS] V:69 [C] ❌ 4PKD_B_V
P:47 [ARG] R:158 [G] B:47 [ARG] V:75 [G] ❌ 1SJ3_P_R
P:50 [LYS] R:154 [C] B:50 [LYS] V:71 [C] ❌ 1SJ3_P_R
P:46 [SER] R:156 [C] B:46 [SER] V:73 [C] ❌ 1SJ3_R:156 no longer at interface
P:92 [ASP] R:155 [U] B:92 [ASP] V:72 [U] ❌ 1SJ3_R:155 no longer at interface
P:6 [THR] R:152 [C] B:6 [THR] V:69 [C] ❌ 4PKD_B:6 no longer at interface
P:58 [ILE] R:153 [A] B:58 [ILE] V:70 [A] ❌ 4PKD_B:58 no longer at interface
P:83 [ARG] R:150 [U] B:83 [ARG] V:67 [U] ❌ 4PKD_B:83 no longer at interface
P:93 [ILE] R:154 [C] B:93 [ILE] V:71 [C] ❌ 4PKD_B:93 no longer at interface
P:23 [LYS] R:143 [A] B:23 [LYS] V:59 [GTP] ❌ 1SJ3_P:23 no longer at interface
P:24 [ASP] R:143 [A] B:24 [ASP] V:59 [GTP] ❌ 1SJ3_P:24 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.66 0.28 0.82 0.97 0.26 0.87 1.0 0.95 0.97 0.81 0.67


Other pairs involving 1SJ3_P_R or 4PKD_B_V

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 1SJ3_P_R 0.97 0.95 0.31 0.97 RNA-binding domain, RBD compare
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 1SJ3_P_R 0.83 0.85 0.49 0.55 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1M5O_C_B 1SJ3_P_R 0.96 0.69 0.42 0.91 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
1SJ3_P_R 7DCO_R_G 0.76 0.5 2.55 0.17 compare
1SJ3_P_R 6F4G_B_C 0.83 0.83 0.4 0.55 RNA-binding domain, RBD compare
1SJ3_P_R 6F4H_A_B 0.97 0.96 0.38 0.71 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 4PR6_A_B 0.97 0.95 0.29 0.97 RNA-binding domain, RBD compare
1SJ3_P_R 3MXH_P_R 0.95 0.64 1.0 0.78 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 2NZ4_A_P 0.94 0.65 0.37 0.91 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare