Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
1YHQ_Q
|
1YHQ_0
|
6AZ3_S
|
6AZ3_2
|
Conserved?
|
---|---|---|---|---|
Q:82 [LYS] | 0:2388 [C] | S:87 [LYS] | 2:1152 [U] | ✔ |
Q:82 [LYS] | 0:2389 [U] | S:87 [LYS] | 2:1153 [OMU] | ✔ |
Q:9 [GLY] | 0:2296 [C] | S:10 [GLY] | 2:1059 [U] | ✔ |
Q:9 [GLY] | 0:2297 [U] | S:10 [GLY] | 2:1060 [G] | ✔ |
Q:9 [GLY] | 0:2298 [C] | S:10 [GLY] | 2:1061 [U] | ✔ |
Q:9 [GLY] | 0:2304 [G] | S:10 [GLY] | 2:1067 [G] | ✔ |
Q:10 [THR] | 0:2297 [U] | S:11 [THR] | 2:1060 [G] | ✔ |
Q:8 [GLU] | 0:2296 [C] | S:9 [SER] | 2:1059 [U] | ✔ |
Q:8 [GLU] | 0:2297 [U] | S:9 [SER] | 2:1060 [G] | ✔ |
Q:14 [LEU] | 0:2364 [A] | S:15 [PHE] | 2:1127 [C] | ✔ |
Q:14 [LEU] | 0:2365 [G] | S:15 [PHE] | 2:1128 [G] | ✔ |
Q:83 [THR] | 0:2387 [U] | S:88 [ARG] | 2:1151 [U] | ✔ |
Q:83 [THR] | 0:2388 [C] | S:88 [ARG] | 2:1152 [U] | ✔ |
Q:69 [ASP] | 0:2403 [C] | S:70 [ARG] | 2:1165 [C] | ✔ |
Q:69 [ASP] | 0:2404 [G] | S:70 [ARG] | 2:1166 [G] | ✔ |
Q:51 [ARG] | 0:2402 [A] | S:52 [MET] | 2:1164 [U] | ✔ |
Q:55 [ARG] | 0:2304 [G] | S:56 [TYR] | 2:1067 [G] | ✔ |
Q:85 [ILE] | 0:2386 [U] | S:90 [CYS] | 2:1150 [A] | ✔ |
Q:85 [ILE] | 0:2387 [U] | S:90 [CYS] | 2:1151 [U] | ✔ |
Q:85 [ILE] | 0:2402 [A] | S:90 [CYS] | 2:1164 [U] | ✔ |
Q:85 [ILE] | 0:2403 [C] | S:90 [CYS] | 2:1165 [C] | ✔ |
Q:45 [PRO] | 0:2365 [G] | S:46 [SER] | 2:1128 [G] | ✔ |
Q:2 [SER] | 0:2295 [G] | S:3 [HIS] | 2:1058 [C] | ✔ |
Q:2 [SER] | 0:2296 [C] | S:3 [HIS] | 2:1059 [U] | ✔ |
Q:2 [SER] | 0:2297 [U] | S:3 [HIS] | 2:1060 [G] | ✔ |
Q:2 [SER] | 0:2298 [C] | S:3 [HIS] | 2:1061 [U] | ✔ |
Q:2 [SER] | 0:2299 [G] | S:3 [HIS] | 2:1062 [U] | ✔ |
Q:2 [SER] | 0:2310 [G] | S:3 [HIS] | 2:1073 [G] | ✔ |
Q:2 [SER] | 0:2311 [A] | S:3 [HIS] | 2:1074 [C] | ✔ |
Q:2 [SER] | 0:2312 [G] | S:3 [HIS] | 2:1075 [A] | ✔ |
Q:1 [PRO] | 0:2298 [C] | S:2 [VAL] | 2:1061 [U] | ✔ |
Q:1 [PRO] | 0:2299 [G] | S:2 [VAL] | 2:1062 [U] | ✔ |
Q:1 [PRO] | 0:2300 [A] | S:2 [VAL] | 2:1063 [A] | ✔ |
Q:1 [PRO] | 0:2306 [U] | S:2 [VAL] | 2:1069 [C] | ✔ |
Q:1 [PRO] | 0:2307 [A] | S:2 [VAL] | 2:1070 [A] | ✔ |
Q:48 [PRO] | 0:2365 [G] | S:49 [ARG] | 2:1128 [G] | ✔ |
Q:48 [PRO] | 0:2370 [A] | S:49 [ARG] | 2:1133 [A] | ✔ |
Q:77 [ASP] | 0:2389 [U] | S:78 [LYS] | 2:1153 [OMU] | ✔ |
Q:3 [SER] | 0:2295 [G] | S:4 [SER] | 2:1058 [C] | ✔ |
Q:3 [SER] | 0:2296 [C] | S:4 [SER] | 2:1059 [U] | ✔ |
Q:15 [LYS] | 0:2364 [A] | S:16 [ALA] | 2:1127 [C] | ✔ |
Q:15 [LYS] | 0:2365 [G] | S:16 [ALA] | 2:1128 [G] | ✔ |
Q:84 [ILE] | 0:2387 [U] | S:89 [ILE] | 2:1151 [U] | ✔ |
Q:84 [ILE] | 0:2388 [C] | S:89 [ILE] | 2:1152 [U] | ✔ |
Q:68 [GLY] | 0:2404 [G] | S:69 [PRO] | 2:1166 [G] | ✔ |
Q:68 [GLY] | 0:2405 [C] | S:69 [PRO] | 2:1167 [A] | ✔ |
Q:23 [THR] | 0:2366 [C] | S:24 [ALA] | 2:1129 [U] | ✔ |
Q:6 [PRO] | 0:2296 [C] | S:7 [TYR] | 2:1059 [U] | ✔ |
Q:6 [PRO] | 0:2389 [U] | S:7 [TYR] | 2:1153 [OMU] | ✔ |
Q:6 [PRO] | 0:2424 [U] | S:7 [TYR] | 2:1185 [C] | ✔ |
Q:6 [PRO] | 0:2425 [A] | S:7 [TYR] | 2:1186 [A2M] | ✔ |
Q:11 [ARG] | 0:2297 [U] | S:12 [ARG] | 2:1060 [G] | ✔ |
Q:11 [ARG] | 0:2298 [C] | S:12 [ARG] | 2:1061 [U] | ✔ |
Q:11 [ARG] | 0:2363 [G] | S:12 [ARG] | 2:1126 [G] | ✔ |
Q:11 [ARG] | 0:2364 [A] | S:12 [ARG] | 2:1127 [C] | ✔ |
Q:4 [ASN] | 0:2295 [G] | S:5 [TYR] | 2:1058 [C] | ✔ |
Q:4 [ASN] | 0:2296 [C] | S:5 [TYR] | 2:1059 [U] | ✔ |
Q:4 [ASN] | 0:2306 [U] | S:5 [TYR] | 2:1069 [C] | ✔ |
Q:70 [ALA] | 0:2403 [C] | S:71 [GLY] | 2:1165 [C] | ✔ |
Q:70 [ALA] | 0:2404 [G] | S:71 [GLY] | 2:1166 [G] | ✔ |
Q:80 [LYS] | 0:2395 [A] | S:85 [LEU] | 2:1157 [G] | ✔ |
Q:50 [GLY] | 0:2402 [A] | S:51 [GLY] | 2:1164 [U] | ✔ |
Q:50 [GLY] | 0:2403 [C] | S:51 [GLY] | 2:1165 [C] | ✔ |
Q:46 [SER] | 0:2365 [G] | S:47 [ALA] | 2:1128 [G] | ✔ |
Q:46 [SER] | 0:2366 [C] | S:47 [ALA] | 2:1129 [U] | ✔ |
Q:46 [SER] | 0:2370 [A] | S:47 [ALA] | 2:1133 [A] | ✔ |
Q:49 [ASN] | 0:2402 [A] | S:50 [GLU] | 2:1164 [U] | ✔ |
Q:49 [ASN] | 0:2403 [C] | S:50 [GLU] | 2:1165 [C] | ✔ |
Q:49 [ASN] | 0:2418 [G] | S:50 [GLU] | 2:1180 [A] | ✔ |
Q:87 [THR] | 0:2403 [C] | S:92 [ARG] | 2:1165 [C] | ✔ |
Q:53 [HIS] | 0:2388 [C] | S:54 [HIS] | 2:1152 [U] | ✔ |
Q:53 [HIS] | 0:2389 [U] | S:54 [HIS] | 2:1153 [OMU] | ✔ |
Q:16 [ASN] | 0:2364 [A] | S:17 [LYS] | 2:1127 [C] | ✔ |
Q:16 [ASN] | 0:2365 [G] | S:17 [LYS] | 2:1128 [G] | ✔ |
Q:16 [ASN] | 0:2366 [C] | S:17 [LYS] | 2:1129 [U] | ✔ |
Q:56 [PHE] | 0:2388 [C] | S:57 [TYR] | 2:1152 [U] | ✔ |
Q:56 [PHE] | 0:2389 [U] | S:57 [TYR] | 2:1153 [OMU] | ✔ |
Q:13 [LYS] | 0:2304 [G] | S:14 [LEU] | 2:1067 [G] | ✔ |
Q:21 [ARG] | 0:2366 [C] | S:22 [HIS] | 2:1129 [U] | ✔ |
Q:5 [GLY] | 0:2295 [G] | S:6 [GLY] | 2:1058 [C] | ✔ |
Q:5 [GLY] | 0:2296 [C] | S:6 [GLY] | 2:1059 [U] | ✔ |
Q:7 [LEU] | 0:2296 [C] | S:8 [LYS] | 2:1059 [U] | ✔ |
Q:7 [LEU] | 0:2297 [U] | S:8 [LYS] | 2:1060 [G] | ✔ |
Q:7 [LEU] | 0:2363 [G] | S:8 [LYS] | 2:1126 [G] | ✔ |
Q:7 [LEU] | 0:2423 [C] | S:8 [LYS] | 2:1184 [C] | ✔ |
Q:7 [LEU] | 0:2424 [U] | S:8 [LYS] | 2:1185 [C] | ✔ |
Q:22 [GLY] | 0:2366 [C] | S:23 [GLY] | 2:1129 [U] | ✔ |
Q:22 [GLY] | 0:2367 [A] | S:23 [GLY] | 2:1130 [A] | ✔ |
Q:67 [GLN] | 0:2403 [C] | S:68 [THR] | 2:1165 [C] | ✔ |
Q:67 [GLN] | 0:2404 [G] | S:68 [THR] | 2:1166 [G] | ✔ |
Q:82 [LYS] | 0:2387 [U] | S:87 [LYS] | 2:1151 [U] | ❌ 6AZ3_S_2 |
Q:8 [GLU] | 0:2305 [A] | S:9 [SER] | 2:1068 [A2M] | ❌ 6AZ3_S_2 |
Q:8 [GLU] | 0:2306 [U] | S:9 [SER] | 2:1069 [C] | ❌ 6AZ3_S_2 |
Q:55 [ARG] | 0:2305 [A] | S:56 [TYR] | 2:1068 [A2M] | ❌ 6AZ3_S_2 |
Q:55 [ARG] | 0:2389 [U] | S:56 [TYR] | 2:1153 [OMU] | ❌ 6AZ3_S_2 |
Q:55 [ARG] | 0:2390 [U] | S:56 [TYR] | 2:1154 [C] | ❌ 6AZ3_S_2 |
Q:77 [ASP] | 0:2394 [A] | S:78 [LYS] | 2:1156 [A] | ❌ 6AZ3_S_2 |
Q:3 [SER] | 0:2297 [U] | S:4 [SER] | 2:1060 [G] | ❌ 6AZ3_S_2 |
Q:68 [GLY] | 0:2403 [C] | S:69 [PRO] | 2:1165 [C] | ❌ 6AZ3_S_2 |
Q:23 [THR] | 0:2367 [A] | S:24 [ALA] | 2:1130 [A] | ❌ 6AZ3_S_2 |
Q:4 [ASN] | 0:2390 [U] | S:5 [TYR] | 2:1154 [C] | ❌ 6AZ3_S_2 |
Q:4 [ASN] | 0:2391 [C] | S:5 [TYR] | 2:1155 [C] | ❌ 6AZ3_S_2 |
Q:80 [LYS] | 0:2394 [A] | S:85 [LEU] | 2:1156 [A] | ❌ 6AZ3_S_2 |
Q:13 [LYS] | 0:2303 [A] | S:14 [LEU] | 2:1066 [C] | ❌ 6AZ3_S_2 |
Q:21 [ARG] | 0:2367 [A] | S:22 [HIS] | 2:1130 [A] | ❌ 6AZ3_S_2 |
Q:5 [GLY] | 0:2424 [U] | S:6 [GLY] | 2:1185 [C] | ❌ 6AZ3_S_2 |
Q:67 [GLN] | 0:2386 [U] | S:68 [THR] | 2:1150 [A] | ❌ 6AZ3_S_2 |
Q:67 [GLN] | 0:2402 [A] | S:68 [THR] | 2:1164 [U] | ❌ 6AZ3_S_2 |
Q:12 [GLY] | 0:2298 [C] | S:13 [HIS] | 2:1061 [U] | ❌ 1YHQ_Q_0 |
Q:1 [PRO] | 0:2297 [U] | S:2 [VAL] | 2:1060 [G] | ❌ 1YHQ_Q_0 |
Q:1 [PRO] | 0:2296 [C] | S:2 [VAL] | 2:1059 [U] | ❌ 1YHQ_Q_0 |
Q:21 [ARG] | 0:2365 [G] | S:22 [HIS] | 2:1128 [G] | ❌ 1YHQ_Q_0 |
Q:45 [PRO] | 0:2364 [A] | S:46 [SER] | 2:1127 [C] | ❌ 1YHQ_Q_0 |
Q:48 [PRO] | 0:2364 [A] | S:49 [ARG] | 2:1127 [C] | ❌ 1YHQ_Q_0 |
Q:48 [PRO] | 0:2423 [C] | S:49 [ARG] | 2:1184 [C] | ❌ 1YHQ_Q_0 |
Q:48 [PRO] | 0:2363 [G] | S:49 [ARG] | 2:1126 [G] | ❌ 1YHQ_Q_0 |
Q:4 [ASN] | 0:2389 [U] | S:5 [TYR] | 2:1153 [OMU] | ❌ 1YHQ_Q_0 |
Q:4 [ASN] | 0:2307 [A] | S:5 [TYR] | 2:1070 [A] | ❌ 1YHQ_Q_0 |
Q:53 [HIS] | 0:2390 [U] | S:54 [HIS] | 2:1154 [C] | ❌ 1YHQ_Q_0 |
Q:55 [ARG] | 0:2303 [A] | S:56 [TYR] | 2:1066 [C] | ❌ 1YHQ_Q_0 |
Q:5 [GLY] | 0:2425 [A] | S:6 [GLY] | 2:1186 [A2M] | ❌ 1YHQ_Q_0 |
Q:5 [GLY] | 0:2389 [U] | S:6 [GLY] | 2:1153 [OMU] | ❌ 1YHQ_Q_0 |
Q:59 [GLN] | 0:2303 [A] | S:60 [ARG] | 2:1066 [C] | ❌ 1YHQ_Q_0 |
Q:59 [GLN] | 0:2304 [G] | S:60 [ARG] | 2:1067 [G] | ❌ 1YHQ_Q_0 |
Q:6 [PRO] | 0:2388 [C] | S:7 [TYR] | 2:1152 [U] | ❌ 1YHQ_Q_0 |
Q:77 [ASP] | 0:2390 [U] | S:78 [LYS] | 2:1154 [C] | ❌ 1YHQ_Q_0 |
Q:77 [ASP] | 0:2395 [A] | S:78 [LYS] | 2:1157 [G] | ❌ 1YHQ_Q_0 |
Q:77 [ASP] | 0:2391 [C] | S:78 [LYS] | 2:1155 [C] | ❌ 1YHQ_Q_0 |
Q:7 [LEU] | 0:2425 [A] | S:8 [LYS] | 2:1186 [A2M] | ❌ 1YHQ_Q_0 |
Q:82 [LYS] | 0:2395 [A] | S:87 [LYS] | 2:1157 [G] | ❌ 1YHQ_Q_0 |
Q:82 [LYS] | 0:2391 [C] | S:87 [LYS] | 2:1155 [C] | ❌ 1YHQ_Q_0 |
Q:21 [ARG] | 0:2353 [A] | S:22 [HIS] | 2:1116 [U] | ❌ 6AZ3_2:1116 no longer at interface |
Q:21 [ARG] | 0:2354 [A] | S:22 [HIS] | 2:1117 [A] | ❌ 6AZ3_2:1117 no longer at interface |
Q:67 [GLN] | 0:2385 [G] | S:68 [THR] | 2:1149 [G] | ❌ 6AZ3_2:1149 no longer at interface |
Q:2 [SER] | 0:2313 [C] | S:3 [HIS] | 2:1076 [G] | ❌ 1YHQ_0:2313 no longer at interface |
Q:69 [ASP] | 0:2417 [C] | S:70 [ARG] | 2:1179 [C] | ❌ 1YHQ_0:2417 no longer at interface |
Q:69 [ASP] | 0:2416 [G] | S:70 [ARG] | 2:1178 [G] | ❌ 1YHQ_0:2416 no longer at interface |
Q:87 [THR] | 0:2417 [C] | S:92 [ARG] | 2:1179 [C] | ❌ 1YHQ_0:2417 no longer at interface |
Q:81 [GLU] | 0:2388 [C] | S:86 [ARG] | 2:1152 [U] | ❌ 6AZ3_S:86 no longer at interface |
Q:72 [LYS] | 0:2386 [U] | S:73 [GLY] | 2:1150 [A] | ❌ 6AZ3_S:73 no longer at interface |
Q:78 [GLY] | 0:2394 [A] | S:79 [PRO] | 2:1156 [A] | ❌ 6AZ3_S:79 no longer at interface |
Q:79 [GLY] | 0:2394 [A] | S:84 [THR] | 2:1156 [A] | ❌ 6AZ3_S:84 no longer at interface |
Q:57 [ASP] | 0:2303 [A] | S:58 [HIS] | 2:1066 [C] | ❌ 6AZ3_S:58 no longer at interface |
Q:47 [VAL] | 0:2370 [A] | S:48 [VAL] | 2:1133 [A] | ❌ 1YHQ_Q:47 no longer at interface |
Q:54 [PRO] | 0:2303 [A] | S:55 [LYS] | 2:1066 [C] | ❌ 1YHQ_Q:54 no longer at interface |
Q:54 [PRO] | 0:2305 [A] | S:55 [LYS] | 2:1068 [A2M] | ❌ 1YHQ_Q:54 no longer at interface |
Q:54 [PRO] | 0:2304 [G] | S:55 [LYS] | 2:1067 [G] | ❌ 1YHQ_Q:54 no longer at interface |
Q:64 [GLU] | 0:2386 [U] | S:65 [TRP] | 2:1150 [A] | ❌ 1YHQ_Q:64 no longer at interface |
Q:71 [TYR] | 0:2403 [C] | S:72 [VAL] | 2:1165 [C] | ❌ 1YHQ_Q:71 no longer at interface |
Q:86 [VAL] | 0:2403 [C] | S:91 [VAL] | 2:1165 [C] | ❌ 1YHQ_Q:86 no longer at interface |
Q:86 [VAL] | 0:2402 [A] | S:91 [VAL] | 2:1164 [U] | ❌ 1YHQ_Q:86 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SH3 | 0.78 | 1.51 | 0.21 | 0.89 | 0.81 | 0.83 | 0.92 | 0.71 | 0.60 | 0.19 | 0.33 |
Other pairs involving 1YHQ_Q_0 or 6AZ3_S_2
Total number of entries: 5
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1VQ8_Q_0 | 1YHQ_Q_0 | 0.99 | 1.0 | 0.21 | 1.0 | SH3 | Archaeal large subunit ribosomal RNA | compare |
1VQ8_Q_0 | 6AZ3_S_2 | 0.70 | 0.78 | 1.53 | 0.23 | SH3 | compare | |
6AZ3_S_2 | 7O7Y_BT_B5 | 0.79 | 0.91 | 1.52 | 0.42 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |
1YHQ_Q_0 | 6AZ3_S_2 | 0.71 | 0.78 | 1.51 | 0.21 | SH3 | compare | |
1YHQ_Q_0 | 7O7Y_BT_B5 | 0.67 | 0.94 | 1.87 | 0.23 | SH3 | compare |