Interface analysis
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Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
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StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Interface
show interface as licoriceCommon contacts -
6AZ3_S
|
6AZ3_2
|
7O7Y_BT
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
S:56 [TYR] | 2:1067 [G] | BT:56 [CYS] | B5:3962 [G] | ✔ |
S:7 [TYR] | 2:1059 [U] | BT:7 [LYS] | B5:3954 [U] | ✔ |
S:7 [TYR] | 2:1152 [U] | BT:7 [LYS] | B5:4046 [U] | ✔ |
S:7 [TYR] | 2:1153 [OMU] | BT:7 [LYS] | B5:4047 [U] | ✔ |
S:7 [TYR] | 2:1185 [C] | BT:7 [LYS] | B5:4080 [U] | ✔ |
S:7 [TYR] | 2:1186 [A2M] | BT:7 [LYS] | B5:4081 [C] | ✔ |
S:60 [ARG] | 2:1066 [C] | BT:60 [LYS] | B5:3961 [C] | ✔ |
S:57 [TYR] | 2:1152 [U] | BT:57 [TYR] | B5:4046 [U] | ✔ |
S:57 [TYR] | 2:1153 [OMU] | BT:57 [TYR] | B5:4047 [U] | ✔ |
S:15 [PHE] | 2:1127 [C] | BT:15 [PHE] | B5:4022 [G] | ✔ |
S:15 [PHE] | 2:1128 [G] | BT:15 [PHE] | B5:4023 [G] | ✔ |
S:2 [VAL] | 2:1070 [A] | BT:2 [THR] | B5:3965 [A] | ✔ |
S:47 [ALA] | 2:1128 [G] | BT:47 [THR] | B5:4023 [G] | ✔ |
S:47 [ALA] | 2:1129 [U] | BT:47 [THR] | B5:4024 [C] | ✔ |
S:47 [ALA] | 2:1133 [A] | BT:47 [THR] | B5:4028 [A] | ✔ |
S:5 [TYR] | 2:1058 [C] | BT:5 [LYS] | B5:3953 [C] | ✔ |
S:5 [TYR] | 2:1059 [U] | BT:5 [LYS] | B5:3954 [U] | ✔ |
S:5 [TYR] | 2:1069 [C] | BT:5 [LYS] | B5:3964 [U] | ✔ |
S:5 [TYR] | 2:1153 [OMU] | BT:5 [LYS] | B5:4047 [U] | ✔ |
S:14 [LEU] | 2:1067 [G] | BT:14 [MET] | B5:3962 [G] | ✔ |
S:11 [THR] | 2:1060 [G] | BT:11 [THR] | B5:3955 [G] | ✔ |
S:10 [GLY] | 2:1060 [G] | BT:10 [GLY] | B5:3955 [G] | ✔ |
S:10 [GLY] | 2:1061 [U] | BT:10 [GLY] | B5:3956 [U] | ✔ |
S:10 [GLY] | 2:1067 [G] | BT:10 [GLY] | B5:3962 [G] | ✔ |
S:88 [ARG] | 2:1151 [U] | BT:88 [ARG] | B5:4045 [PSU] | ✔ |
S:88 [ARG] | 2:1152 [U] | BT:88 [ARG] | B5:4046 [U] | ✔ |
S:90 [CYS] | 2:1150 [A] | BT:90 [ASN] | B5:4044 [A] | ✔ |
S:90 [CYS] | 2:1151 [U] | BT:90 [ASN] | B5:4045 [PSU] | ✔ |
S:90 [CYS] | 2:1164 [U] | BT:90 [ASN] | B5:4058 [PSU] | ✔ |
S:90 [CYS] | 2:1165 [C] | BT:90 [ASN] | B5:4059 [A] | ✔ |
S:69 [PRO] | 2:1166 [G] | BT:69 [GLN] | B5:4060 [C] | ✔ |
S:69 [PRO] | 2:1167 [A] | BT:69 [GLN] | B5:4061 [A] | ✔ |
S:68 [THR] | 2:1165 [C] | BT:68 [THR] | B5:4059 [A] | ✔ |
S:68 [THR] | 2:1166 [G] | BT:68 [THR] | B5:4060 [C] | ✔ |
S:51 [GLY] | 2:1164 [U] | BT:51 [GLY] | B5:4058 [PSU] | ✔ |
S:51 [GLY] | 2:1165 [C] | BT:51 [GLY] | B5:4059 [A] | ✔ |
S:6 [GLY] | 2:1058 [C] | BT:6 [GLY] | B5:3953 [C] | ✔ |
S:6 [GLY] | 2:1059 [U] | BT:6 [GLY] | B5:3954 [U] | ✔ |
S:6 [GLY] | 2:1186 [A2M] | BT:6 [GLY] | B5:4081 [C] | ✔ |
S:8 [LYS] | 2:1059 [U] | BT:8 [ARG] | B5:3954 [U] | ✔ |
S:8 [LYS] | 2:1060 [G] | BT:8 [ARG] | B5:3955 [G] | ✔ |
S:8 [LYS] | 2:1126 [G] | BT:8 [ARG] | B5:4021 [G] | ✔ |
S:8 [LYS] | 2:1184 [C] | BT:8 [ARG] | B5:4079 [C] | ✔ |
S:8 [LYS] | 2:1185 [C] | BT:8 [ARG] | B5:4080 [U] | ✔ |
S:87 [LYS] | 2:1152 [U] | BT:87 [LYS] | B5:4046 [U] | ✔ |
S:87 [LYS] | 2:1153 [OMU] | BT:87 [LYS] | B5:4047 [U] | ✔ |
S:87 [LYS] | 2:1155 [C] | BT:87 [LYS] | B5:4049 [C] | ✔ |
S:87 [LYS] | 2:1157 [G] | BT:87 [LYS] | B5:4051 [G] | ✔ |
S:17 [LYS] | 2:1127 [C] | BT:17 [ARG] | B5:4022 [G] | ✔ |
S:17 [LYS] | 2:1128 [G] | BT:17 [ARG] | B5:4023 [G] | ✔ |
S:17 [LYS] | 2:1129 [U] | BT:17 [ARG] | B5:4024 [C] | ✔ |
S:81 [ARG] | 2:1156 [A] | BT:81 [LYS] | B5:4050 [A] | ✔ |
S:81 [ARG] | 2:1157 [G] | BT:81 [LYS] | B5:4051 [G] | ✔ |
S:85 [LEU] | 2:1157 [G] | BT:85 [LEU] | B5:4051 [G] | ✔ |
S:4 [SER] | 2:1058 [C] | BT:4 [THR] | B5:3953 [C] | ✔ |
S:4 [SER] | 2:1059 [U] | BT:4 [THR] | B5:3954 [U] | ✔ |
S:83 [ARG] | 2:1157 [G] | BT:83 [LYS] | B5:4051 [G] | ✔ |
S:80 [VAL] | 2:1157 [G] | BT:80 [VAL] | B5:4051 [G] | ✔ |
S:55 [LYS] | 2:1066 [C] | BT:55 [LYS] | B5:3961 [C] | ✔ |
S:55 [LYS] | 2:1067 [G] | BT:55 [LYS] | B5:3962 [G] | ✔ |
S:55 [LYS] | 2:1068 [A2M] | BT:55 [LYS] | B5:3963 [G] | ✔ |
S:50 [GLU] | 2:1164 [U] | BT:50 [LYS] | B5:4058 [PSU] | ✔ |
S:50 [GLU] | 2:1165 [C] | BT:50 [LYS] | B5:4059 [A] | ✔ |
S:50 [GLU] | 2:1180 [A] | BT:50 [LYS] | B5:4074 [G] | ✔ |
S:89 [ILE] | 2:1151 [U] | BT:89 [ILE] | B5:4045 [PSU] | ✔ |
S:89 [ILE] | 2:1152 [U] | BT:89 [ILE] | B5:4046 [U] | ✔ |
S:78 [LYS] | 2:1153 [OMU] | BT:78 [LYS] | B5:4047 [U] | ✔ |
S:78 [LYS] | 2:1154 [C] | BT:78 [LYS] | B5:4048 [U] | ✔ |
S:78 [LYS] | 2:1155 [C] | BT:78 [LYS] | B5:4049 [C] | ✔ |
S:78 [LYS] | 2:1157 [G] | BT:78 [LYS] | B5:4051 [G] | ✔ |
S:3 [HIS] | 2:1061 [U] | BT:3 [ASN] | B5:3956 [U] | ✔ |
S:3 [HIS] | 2:1062 [U] | BT:3 [ASN] | B5:3957 [C] | ✔ |
S:70 [ARG] | 2:1165 [C] | BT:70 [HIS] | B5:4059 [A] | ✔ |
S:70 [ARG] | 2:1166 [G] | BT:70 [HIS] | B5:4060 [C] | ✔ |
S:70 [ARG] | 2:1178 [G] | BT:70 [HIS] | B5:4072 [G] | ✔ |
S:70 [ARG] | 2:1179 [C] | BT:70 [HIS] | B5:4073 [C] | ✔ |
S:71 [GLY] | 2:1165 [C] | BT:71 [ALA] | B5:4059 [A] | ✔ |
S:71 [GLY] | 2:1166 [G] | BT:71 [ALA] | B5:4060 [C] | ✔ |
S:46 [SER] | 2:1127 [C] | BT:46 [GLY] | B5:4022 [G] | ✔ |
S:46 [SER] | 2:1128 [G] | BT:46 [GLY] | B5:4023 [G] | ✔ |
S:22 [HIS] | 2:1128 [G] | BT:22 [HIS] | B5:4023 [G] | ✔ |
S:22 [HIS] | 2:1129 [U] | BT:22 [HIS] | B5:4024 [C] | ✔ |
S:23 [GLY] | 2:1129 [U] | BT:23 [GLY] | B5:4024 [C] | ✔ |
S:23 [GLY] | 2:1130 [A] | BT:23 [GLY] | B5:4025 [A] | ✔ |
S:49 [ARG] | 2:1127 [C] | BT:49 [GLN] | B5:4022 [G] | ✔ |
S:49 [ARG] | 2:1128 [G] | BT:49 [GLN] | B5:4023 [G] | ✔ |
S:49 [ARG] | 2:1133 [A] | BT:49 [GLN] | B5:4028 [A] | ✔ |
S:49 [ARG] | 2:1184 [C] | BT:49 [GLN] | B5:4079 [C] | ✔ |
S:13 [HIS] | 2:1061 [U] | BT:13 [TYR] | B5:3956 [U] | ✔ |
S:9 [SER] | 2:1059 [U] | BT:9 [ARG] | B5:3954 [U] | ✔ |
S:9 [SER] | 2:1060 [G] | BT:9 [ARG] | B5:3955 [G] | ✔ |
S:12 [ARG] | 2:1060 [G] | BT:12 [ARG] | B5:3955 [G] | ✔ |
S:12 [ARG] | 2:1061 [U] | BT:12 [ARG] | B5:3956 [U] | ✔ |
S:12 [ARG] | 2:1126 [G] | BT:12 [ARG] | B5:4021 [G] | ✔ |
S:12 [ARG] | 2:1127 [C] | BT:12 [ARG] | B5:4022 [G] | ✔ |
S:92 [ARG] | 2:1165 [C] | BT:92 [ARG] | B5:4059 [A] | ✔ |
S:16 [ALA] | 2:1127 [C] | BT:16 [SER] | B5:4022 [G] | ✔ |
S:16 [ALA] | 2:1128 [G] | BT:16 [SER] | B5:4023 [G] | ✔ |
S:54 [HIS] | 2:1152 [U] | BT:54 [HIS] | B5:4046 [U] | ✔ |
S:54 [HIS] | 2:1153 [OMU] | BT:54 [HIS] | B5:4047 [U] | ✔ |
S:54 [HIS] | 2:1154 [C] | BT:54 [HIS] | B5:4048 [U] | ✔ |
S:56 [TYR] | 2:1066 [C] | BT:56 [CYS] | B5:3961 [C] | ❌ 7O7Y_BT_B5 |
S:60 [ARG] | 2:1067 [G] | BT:60 [LYS] | B5:3962 [G] | ❌ 7O7Y_BT_B5 |
S:2 [VAL] | 2:1059 [U] | BT:2 [THR] | B5:3954 [U] | ❌ 7O7Y_BT_B5 |
S:2 [VAL] | 2:1060 [G] | BT:2 [THR] | B5:3955 [G] | ❌ 7O7Y_BT_B5 |
S:2 [VAL] | 2:1061 [U] | BT:2 [THR] | B5:3956 [U] | ❌ 7O7Y_BT_B5 |
S:2 [VAL] | 2:1062 [U] | BT:2 [THR] | B5:3957 [C] | ❌ 7O7Y_BT_B5 |
S:2 [VAL] | 2:1063 [A] | BT:2 [THR] | B5:3958 [A] | ❌ 7O7Y_BT_B5 |
S:2 [VAL] | 2:1069 [C] | BT:2 [THR] | B5:3964 [U] | ❌ 7O7Y_BT_B5 |
S:5 [TYR] | 2:1070 [A] | BT:5 [LYS] | B5:3965 [A] | ❌ 7O7Y_BT_B5 |
S:10 [GLY] | 2:1059 [U] | BT:10 [GLY] | B5:3954 [U] | ❌ 7O7Y_BT_B5 |
S:52 [MET] | 2:1164 [U] | BT:52 [MET] | B5:4058 [PSU] | ❌ 7O7Y_BT_B5 |
S:6 [GLY] | 2:1153 [OMU] | BT:6 [GLY] | B5:4047 [U] | ❌ 7O7Y_BT_B5 |
S:8 [LYS] | 2:1186 [A2M] | BT:8 [ARG] | B5:4081 [C] | ❌ 7O7Y_BT_B5 |
S:24 [ALA] | 2:1129 [U] | BT:24 [VAL] | B5:4024 [C] | ❌ 7O7Y_BT_B5 |
S:3 [HIS] | 2:1058 [C] | BT:3 [ASN] | B5:3953 [C] | ❌ 7O7Y_BT_B5 |
S:3 [HIS] | 2:1059 [U] | BT:3 [ASN] | B5:3954 [U] | ❌ 7O7Y_BT_B5 |
S:3 [HIS] | 2:1060 [G] | BT:3 [ASN] | B5:3955 [G] | ❌ 7O7Y_BT_B5 |
S:49 [ARG] | 2:1126 [G] | BT:49 [GLN] | B5:4021 [G] | ❌ 7O7Y_BT_B5 |
S:92 [ARG] | 2:1179 [C] | BT:92 [ARG] | B5:4073 [C] | ❌ 7O7Y_BT_B5 |
S:14 [LEU] | 2:1066 [C] | BT:14 [MET] | B5:3961 [C] | ❌ 6AZ3_S_2 |
S:24 [ALA] | 2:1130 [A] | BT:24 [VAL] | B5:4025 [A] | ❌ 6AZ3_S_2 |
S:3 [HIS] | 2:1069 [C] | BT:3 [ASN] | B5:3964 [U] | ❌ 6AZ3_S_2 |
S:3 [HIS] | 2:1070 [A] | BT:3 [ASN] | B5:3965 [A] | ❌ 6AZ3_S_2 |
S:3 [HIS] | 2:1063 [A] | BT:3 [ASN] | B5:3958 [A] | ❌ 6AZ3_S_2 |
S:5 [TYR] | 2:1154 [C] | BT:5 [LYS] | B5:4048 [U] | ❌ 6AZ3_S_2 |
S:5 [TYR] | 2:1155 [C] | BT:5 [LYS] | B5:4049 [C] | ❌ 6AZ3_S_2 |
S:52 [MET] | 2:1184 [C] | BT:52 [MET] | B5:4079 [C] | ❌ 6AZ3_S_2 |
S:56 [TYR] | 2:1153 [OMU] | BT:56 [CYS] | B5:4047 [U] | ❌ 6AZ3_S_2 |
S:6 [GLY] | 2:1185 [C] | BT:6 [GLY] | B5:4080 [U] | ❌ 6AZ3_S_2 |
S:7 [TYR] | 2:1058 [C] | BT:7 [LYS] | B5:3953 [C] | ❌ 6AZ3_S_2 |
S:8 [LYS] | 2:1127 [C] | BT:8 [ARG] | B5:4022 [G] | ❌ 6AZ3_S_2 |
S:80 [VAL] | 2:1156 [A] | BT:80 [VAL] | B5:4050 [A] | ❌ 6AZ3_S_2 |
S:81 [ARG] | 2:1155 [C] | BT:81 [LYS] | B5:4049 [C] | ❌ 6AZ3_S_2 |
S:83 [ARG] | 2:1156 [A] | BT:83 [LYS] | B5:4050 [A] | ❌ 6AZ3_S_2 |
S:9 [SER] | 2:1069 [C] | BT:9 [ARG] | B5:3964 [U] | ❌ 6AZ3_S_2 |
S:9 [SER] | 2:1185 [C] | BT:9 [ARG] | B5:4080 [U] | ❌ 6AZ3_S_2 |
S:9 [SER] | 2:1062 [U] | BT:9 [ARG] | B5:3957 [C] | ❌ 6AZ3_S_2 |
S:9 [SER] | 2:1063 [A] | BT:9 [ARG] | B5:3958 [A] | ❌ 6AZ3_S_2 |
S:9 [SER] | 2:1068 [A2M] | BT:9 [ARG] | B5:3963 [G] | ❌ 6AZ3_S_2 |
S:92 [ARG] | 2:1164 [U] | BT:92 [ARG] | B5:4058 [PSU] | ❌ 6AZ3_S_2 |
S:92 [ARG] | 2:1180 [A] | BT:92 [ARG] | B5:4074 [G] | ❌ 6AZ3_S_2 |
S:92 [ARG] | 2:1166 [G] | BT:92 [ARG] | B5:4060 [C] | ❌ 6AZ3_S_2 |
S:3 [HIS] | 2:1073 [G] | BT:3 [ASN] | B5:3968 [G] | ❌ 7O7Y_B5:3968 no longer at interface |
S:3 [HIS] | 2:1074 [C] | BT:3 [ASN] | B5:3969 [C] | ❌ 7O7Y_B5:3969 no longer at interface |
S:3 [HIS] | 2:1075 [A] | BT:3 [ASN] | B5:3970 [A] | ❌ 7O7Y_B5:3970 no longer at interface |
S:3 [HIS] | 2:1076 [G] | BT:3 [ASN] | B5:3971 [G] | ❌ 7O7Y_B5:3971 no longer at interface |
S:2 [VAL] | 2:1071 [A] | BT:2 [THR] | B5:3966 [6MZ] | ❌ 6AZ3_2:1071 no longer at interface |
S:24 [ALA] | 2:1131 [A] | BT:24 [VAL] | B5:4026 [A] | ❌ 6AZ3_2:1131 no longer at interface |
S:50 [GLU] | 2:1181 [A] | BT:50 [LYS] | B5:4075 [G] | ❌ 6AZ3_2:1181 no longer at interface |
S:7 [TYR] | 2:1161 [G] | BT:7 [LYS] | B5:4055 [G] | ❌ 6AZ3_2:1161 no longer at interface |
S:7 [TYR] | 2:1163 [A] | BT:7 [LYS] | B5:4057 [A] | ❌ 6AZ3_2:1163 no longer at interface |
S:7 [TYR] | 2:1162 [A] | BT:7 [LYS] | B5:4056 [A] | ❌ 6AZ3_2:1162 no longer at interface |
S:48 [VAL] | 2:1133 [A] | BT:48 [VAL] | B5:4028 [A] | ❌ 7O7Y_BT:48 no longer at interface |
S:65 [TRP] | 2:1150 [A] | BT:65 [TYR] | B5:4044 [A] | ❌ 7O7Y_BT:65 no longer at interface |
S:72 [VAL] | 2:1165 [C] | BT:72 [VAL] | B5:4059 [A] | ❌ 7O7Y_BT:72 no longer at interface |
S:91 [VAL] | 2:1164 [U] | BT:91 [VAL] | B5:4058 [PSU] | ❌ 7O7Y_BT:91 no longer at interface |
S:91 [VAL] | 2:1165 [C] | BT:91 [VAL] | B5:4059 [A] | ❌ 7O7Y_BT:91 no longer at interface |
S:58 [HIS] | 2:1066 [C] | BT:58 [HIS] | B5:3961 [C] | ❌ 6AZ3_S:58 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SH3 | Eukaryotic large subunit ribosomal RNA | 0.91 | 1.52 | 0.42 | 0.86 | 0.9 | 0.92 | 0.9 | 0.79 | 0.70 | 0.40 | 0.28 |
Other pairs involving 6AZ3_S_2 or 7O7Y_BT_B5
Total number of entries: 6
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1VQ8_Q_0 | 7O7Y_BT_B5 | 0.67 | 0.94 | 1.91 | 0.22 | SH3 | compare | |
1VQ8_Q_0 | 6AZ3_S_2 | 0.70 | 0.78 | 1.53 | 0.23 | SH3 | compare | |
6AZ3_S_1 | 7O7Y_BT_B5 | 0.69 | 0.92 | 1.39 | 0.26 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |
6AZ3_S_2 | 7O7Y_BT_B5 | 0.79 | 0.91 | 1.52 | 0.42 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |
1YHQ_Q_0 | 6AZ3_S_2 | 0.71 | 0.78 | 1.51 | 0.21 | SH3 | compare | |
1YHQ_Q_0 | 7O7Y_BT_B5 | 0.67 | 0.94 | 1.87 | 0.23 | SH3 | compare |