Tools & DBs
Proteins & Proteomes
The tools and databases developed at the I2BC are categorised by subject. The following are tools & databases to do with proteins & proteomes.
Predict single and multimeric protein structures with AlphaFold
***Service only accessible to I2BC members***
Login and password correspond to your usual I2BC credentials (cf. https://multipass.i2bc.paris-saclay.fr).
Explore centriole, centrosome, basal bodie, cilia and flagella proteins centralised from heterogeneous sources linked to OMIM data on human hereditary diseases
An efficient and rapid tool to extract the most reliable mature protein N-termini from proteomics data
A service for optimised model generation through suboptimal HMM-HMM sequence alignment
Predict single and multimeric protein structures with InterEvDock3 using homology modelling and/or free docking
Database for exploring 3D structures of protein complexes and their homologs in complex
Tools to create and analyse protein MSAs and analyse evolutionary rates thereof.
Dynamically explore a database of manually curated mature protein N-termini in 5 different species
ORENZA
An up-to-date database of orphan enzyme activities i.e. reported activities without known sequences within the major protein databases
Find interaction networks from an input list of proteins
Interactively explore a database of 765 protein-RNA interfaces and their evolutionary relationships
Predict N-terminal excision, acetylation, myristoylation & S-palmitoylation of proteins
Detect head-neck-tail modules and recombinase genes in phage genomes