Getting started with Snakemake
It’s the same setup as for Exercise 1A and Exercise 1B: we will work on a node of the cluster with Snakemake, FastQC and MultiQC modules loaded.
As a reminder, you should be in your working directory from Exercise 1A and B in which you have the Data/ folder containing all example files.
You should also have snakemake, FastQC and MultiQC loaded.
NB: If you’re starting Exercise 1 from here, you can copy the solution script ex1b_o3.smk from Exercise 1B objective 3.